Probing microscopic origins of confined subdiffusion by first-passage observables.
نویسندگان
چکیده
Subdiffusive motion of tracer particles in complex crowded environments, such as biological cells, has been shown to be widespread. This deviation from Brownian motion is usually characterized by a sublinear time dependence of the mean square displacement (MSD). However, subdiffusive behavior can stem from different microscopic scenarios that cannot be identified solely by the MSD data. In this article we present a theoretical framework that permits the analytical calculation of first-passage observables (mean first-passage times, splitting probabilities, and occupation times distributions) in disordered media in any dimensions. This analysis is applied to two representative microscopic models of subdiffusion: continuous-time random walks with heavy tailed waiting times and diffusion on fractals. Our results show that first-passage observables provide tools to unambiguously discriminate between the two possible microscopic scenarios of subdiffusion. Moreover, we suggest experiments based on first-passage observables that could help in determining the origin of subdiffusion in complex media, such as living cells, and discuss the implications of anomalous transport to reaction kinetics in cells.
منابع مشابه
Detecting origins of subdiffusion: P-variation test for confined systems.
In this paper, we propose a method to distinguish between mechanisms leading to single molecule subdiffusion in confinement. We show that the method of p-variation, introduced in the recent paper [M. Magdziarz, Phys. Rev. Lett. 103, 180602 (2009)], can be successfully applied also for confined systems. We propose a test which allows distinguishing between heavy-tailed continuous-time random wal...
متن کاملFirst passage times and asymmetry of DNA translocation.
Motivated by experiments in which single-stranded DNA with a short hairpin loop at one end undergoes unforced diffusion through a narrow pore, we study the first passage times for a particle, executing one-dimensional Brownian motion in an asymmetric sawtooth potential, to exit one of the boundaries. We consider the first passage times for the case of classical diffusion, characterized by a mea...
متن کاملMICROSCOPIC REARRANGEMENTS WITHIN GRANULAR SHEAR FLOWS : SEGREGATION , SUBDIFFUSION , & ROTATION by Matthew
Title of dissertation: MICROSCOPIC REARRANGEMENTS WITHIN GRANULAR SHEAR FLOWS: SEGREGATION, SUBDIFFUSION, & ROTATION Matthew John Harrington Doctor of Philosophy, 2015 Dissertation directed by: Professor Wolfgang Losert Department of Physics Granular materials constitute a class of complex systems that can exhibit global behaviors that are reminiscent of solids, liquids, gases, or otherwise uni...
متن کاملProbing the type of anomalous diffusion with single-particle tracking.
Many reactions in complex fluids, e.g. signaling cascades in the cytoplasm of living cells, are governed by a diffusion-driven encounter of reactants. Yet, diffusion in complex fluids often exhibits an anomalous characteristic ('subdiffusion'). Since different types of subdiffusion have distinct effects on timing and equilibria of chemical reactions, a thorough determination of the reactants' t...
متن کاملSubdiffusion in time-averaged, confined random walks.
Certain techniques characterizing diffusive processes, such as single-particle tracking or molecular dynamics simulation, provide time averages rather than ensemble averages. Whereas the ensemble-averaged mean-squared displacement (MSD) of an unbounded continuous time random walk (CTRW) with a broad distribution of waiting times exhibits subdiffusion, the time-averaged MSD, delta2, does not. We...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Proceedings of the National Academy of Sciences of the United States of America
دوره 105 15 شماره
صفحات -
تاریخ انتشار 2008